I dont have water damage YET but im getting water into my back bunk when its closed and raining.
I noticed my white seal that goes around the bunk is falling apart. I see in your pictures your seal looks like its due to be changed as well.
I bought 14/13mm hollow D weather strip on amazon. It should be here friday.
Also another thing... When i was talking to Jayco they asked if the bunk was bowed in our out? I really never noticed till then. But mine is bowed out in the middle. So its not touching the old dried out broken seal.
Im not quite sure how im going to reverse that but im sure the new seal will fix it.
My biggest isssue is the bunk end plastic rail thats sewn to the tents. Where is connects to trailer and screwed in is all broken. I mentioned it to Jayco and they said its a common issue and i have to replace the whole tent! So i took big washers and screws and sandwiched the plastic to the frame.
Hope any of this helps.