I noticed that the other day while browsing the yard after a shopping spree at my local CW store. Couldn't figure out why the designers don't look at these things after they're built.
The only way I can see to correct this "design flaw" is with a saw. You can either cut out a piece of the slide-out molding with a razor pull saw or multi-tool saw, or you can trim out a piece of the door with a coping saw. I'd suggest the first, since the door is a hollow core and you may need to cut clear through the small wood frame between the layers of plywood. Sorry, but I just don't see a "cleaner" fix.