Your hot water tank will mostly drain through the low point drain given enough time, that should be what happened here based on what you said. Some water may be left if the water outlet is higher than the plug, although a little bit of water left in the tank won't harm it from freeze expansion - it has lots of room to expand. If you want to be extra sure it's not held by vacuum, just pop the pressure relief valve to let air into the top of the tank.
I suspect in the past you may have done the bypass before the drain, thus why you were expecting to find water still in the HWT?
Note that if you moved your valves to the summer position with pink stuff in the pipes, some will now be in your HWT as well. Be sure to flush it before using again next season.
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2011 Jayco X19H (purchased 2015)
2008 Jayco 1007 PUP (purchased new, traded for the X19)
2018 Nissan Titan Midnight Ed.
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