Bobstekeur,
At first glance it appears that the grey caulking at the ladder roof mounts and along the side of the short black roof trim rail are in need of repair (new caulk).
Also, looking at the discharge end of the black gutter rail there appears to be a little 'caulk' separation at the gutter rail's 'top edge' and the short black roof trim. The caulk running along the TPO material and the top edge of the gutter rail appears to be compromised as well (right of your hand).
Compromised roof caulk is a common root cause of moisture intrusion, and moisture will travel to different places once it's found an entry point thus effecting both roof and wall structures.
If moisture is getting behind the gutter rail and/or underneath the TPO, it can cause the symptoms you described/show. Moisture behind the gutter rail can also use the gutter rail mounting screws to access the wall structure.
The soft wood roof panel (under TPO) at the ladder mounting area may require removing some the wall/roof trim rail screws so that the TPO can be folded back to determine degree of wood panel damage. OR.., (if possible) cut a small access/inspection opening in the TT's interior ceiling panel underneath the ladder mounting area in question.
Addressing all compromised roof caulking is a given.
Hopefully other JOF members will chime in with some suggestion as well.
Bob
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2016 GM 2500HD 6.0L/4.10
2018 Jay Flight 24RBS
2002 GM 2500HD 6.0L/4:10 (retired)
2005 Jayco Eagle 278FBS (retired)
1999 Jayco Eagle 246FB (retired)
Reese HP Dual Cam (Strait-Line)